Publications

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  1. Kwon T, Huse HK, Vogel C, Whiteley M, Marcotte EM (2014) Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains. Journal of Proteome Research, in press Link
  2. Chung M-I*, Kwon T*, Gupta R, Baker JC, Marcotte EM, Wallingford JB (2014) Coordinated genomic control of ciliogenesis and cell movement by Rfx2. eLife, 3:e01439 PubMed:24424412
  3. Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P (2013) Statistical approach to protein quantification. Mol. Cell. Proteomics, 13(2):666-77 PubMed:24255132
  4. Huse HK, Kwon T, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M (2013) An evolutionary approach to identify adaptive traits in a chronic pathogen. PLoS ONE, 8(12): e82621 PubMed:24324811
  5. Woods S*, Coghlan A*, Rivers D*, Warnecke T*, Jeffries SJ, Kwon T, Rogers A, Hurst LD, Ahringer J (2013). Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses. PLoS Genetics 9(5):e1003330 PubMed:23675306
  6. Wessel AK, Liew J, Kwon T, Marcotte EM, Whiteley M (2013). The role of Pseudomonas aeruginosa peptidoglycan-associated outer membrane proteins in vesicle biogenesis. Journal of Bacteriology 195(2):213-219. PubMed:23123904
  7. Uribe RA, Kwon T, Marcotte EM, Gross JM (2012). Id2a functions to limit Notch pathway activity and thereby influence retinoblast proliferation to differentiation during zebrafish retinogenesis. Developmental Biology 371(2):280-292. PubMed:22981606
  8. Kwon T*, Choi H*, Vogel C, Nesvizhskii AI, Marcotte EM (2011). MSblender: a probabilistic approach for integrating peptide identifications from multiple database search engines. Journal of Proteome Research 10(7):2949-58. PubMed:21488652
  9. Huse HK*, Kwon T*, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M (2010). Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo. mBio 1(4):e00199-10 PubMed:20856824 (Covered by Science News, Oct. 2010 | mBio ‘Our Most Read Paper’ of May 2012.)
  10. Laurent J*, Vogel C*, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald PC, Marcotte EM (2010). Protein abundances are more conserved than mRNA abundances across diverse taxa. Proteomics 10(23):4209-12. PubMed:21089048
  11. Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP (2009). Mining gene functional networks to improve mass-spectrometry based protein identification. Bioinformatics 25(22):2955-2961. PubMed: 1963309