XENLA Genome

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Genome browser

Genome version

In here, 'N50' is calculated based on the combination of 'Scaffolds' and 'Contigs', so it may be slightly different to official report of 'Scaffolds N50'.

Name Release Date Concat. Length (bp) N50 (bp) Scaffolds > 10kbp Remarks
JGIv7b 2013 May 2.78 Gbp 3.49 Mbp 2,598 JGIv7.1;Released in public. Minor updates of 7.0.
JGIv7a 2013 Mar. 2.72 Gbp 1.15 Mbp 5,714 JGIv7;Released in public.
JGIv6a 2012 Jul. 2.75 Gbp 0.70 Mbp 8,426 Officially released in XenBase;
Minor update of JGIv6.
JGIv6 2012 Jul. 2.75 Gbp 0.70 Mbp 8,426 Officially released in XenBase.
JGIv5 2011 Oct. 2.84 Gbp 0.28 Mbp 16,625 Released in Xenopus PI Meeting.
JGIv1 2010 Dec. 2.30 Gbp 8 kbp 385,933 Internal Use Only.
Name Release Date Concat. Length (bp) N50 (bp) Scaffolds > 10kbp Remarks
NIGv1 2012 Nov. 2.88 Gbp 0.34 Mbp 14,260 Original name is 'xl.v1soap';
Internal Use Only.
NIGv1ap 2012 Nov. 3.27 Gbp 0.17 Mbp 39,283 Original name is 'xl.v3ap'(AllPath?);
Internal Use Only.
NIGv1m 2012 Nov. 2.84 Gbp 0.28 Mbp 82,132 Original name is 'xl.v5m';
Internal Use Only.
NIGv2 2013 Feb. 2.89 Gbp 0.72 Mbp 5,394 Original name is 'xl.v2soap';
Internal Use Only.
NIGv2c 2013 Feb. 2.88 Gbp 0.71 Mbp 5,377 Original name is 'xl.v2soap,GapClosed';
Can browse at NIG gbrowser.

See Also