$ conda install fastqc
If you have a problem to run fastqc afterward, with "No fonts found", install the following packages.
$ conda install font-ttf-dejavu-sans-mono fontconfig
$ mkdir fastqc_out $ fastqc my_file.fastq -o fastqc_out
If you want to make a single report for all fastq files,
$ cat *.fq > merged.fq $ fastqc merged.fq -o fastqc_out
If your files are compressed,
$ zcat *fq.gz | fastqc stdin -o fastqc_out